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Making it through the final stretch of a PhD in conservation genomics and bioinformatics

by Holly Nelson (PhD Student)

Entering the final stage of a PhD is both a marathon and a sprint. After a quick 3-4 years of terminal windows, countless hours coding, latex gloves, tweaking plots to the perfect shade of maroon (#B03060), and obsessing over a turtle species that lives a world away, the world could be ending, and honestly, I wouldn’t even know.

One surprising obsession? Table spacing. Somehow, this has become the hill I’m willing to die on. Not to mention after three and a half years into postgrad education, I still don’t know whether it should be a comma or a semicolon. Who knew this was the pinnacle of academic thought? Shout-out to my colleagues who don’t blink when I send them scripts named things like “goNe_analysis__fix6_final_FINAL_v10.pbs” (you know who you are), and to my long-suffering supervisors who’ve received my manuscript drafts entitled “Manuscript_turtle_final_DEFSFinal4_v12.docx.” And Andrea—my fellow PhDer-in-crime who has joined me on the adventure. There’s something comforting in having a fellow office mate who reaches a delusion level just as unhinged as yours.

Honestly, perspective is nearly impossible when your days blur together into one big troubleshooting session, often caused by a stray space somewhere in a 94-line code. But at the end of the day the completion of a PhD is less about perfection or about how many pages are in pdf document you’ve spent years creating, and more about progress. My folders and directories may look like a chaotic labyrinth, but hey, they’re a testament to something resembling progress—90% of it’s stuff that would’ve looked like rocket science to me a couple of years ago. It’s about stepping back, handing in, disappearing, and leaving the pandora’s box of questions you opened during your thesis for the poor Honours student.

To anyone on the journey, hang in there. Or don’t, drop out and open a bakery if you feel like it. Either way, you’re not alone in those late-night bursts of productivity, never ending imposter syndrome, praying that the laptop you’ve run into the ground turns on every morning, or that compulsive need to move the plot legend just 0.5mm more to the left.

You’re the world expert in whatever obscure and niche little thing it is you do, even if no one, including you, fully understands it. Hold onto the fact that your work probably means something, and if it doesn’t, well, at least it’s given you something to do for the last few years.

As my daily reminder sticky-note says “it’s not that serious”.

Bilby release

Holly Nelson (PhD Student) is working on how we can use genomics to revolutionise threatened species management. From genome assembly to downstream analyses using whole-genome data, Holly is using her work to answer genetic questions on the Bellinger River Snapping Turtle, Koala, and other threatened species. Her work, in partnership with the NSW Governments Saving Our Species program, aims to create more robust conservation strategies that can be developed and applied together with wildlife managers.

Sydney Science in Instagram: Meet PhD Student Holly Nelson

Meet PhD student Holly Nelson. Her research with the USYD Australian Wildlife Genomics group and NSW Department of Planning and Environment focuses on using genomic data to help provide tools for the management of threatened species, especially the critically endangered Bellinger River snapping turtle.

Watch the full video here: https://www.instagram.com/sydney_science/reel/Cw1FG6-hhD8/

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What my PhD has taught me: Turtles are awesome

by Holly Nelson (PhD Student)

So, you probably think Tasmanian Devils are adorable and Koalas are super cute. Well, let me tell you about turtles and four quick reasons why they’re awesome.

1. Free rent: Imagine having a portable, self-contained home acquired at birth, the Sydney housing market would be the least of your worries. Unlike hermit crabs, the shells of these little keratin caravans are an extension of their spine and are the equivalent of a ribcage.

2. Solar panel: A turtle’s shell is more than its home. Not only is it a protective barrier against predators, turtles also use it to synthesise vitamin D from UV light which is needed for bone and shell growth. Not only this, turtles have nerve receptors in their shells, making them suckers for butt scratches.

3. Mixed signals: If you’ve ever seen a turtle slapping another turtle, one word, foreplay. Yes, turtles slap each other’s faces to convey affection and to attract a mate. A male turtle will slap a females face multiple times to make it clear he digs her. No mixed signals in the turtle world.

4. Realer than Jurassic World: Who needs CGI when you have real life dinosaurs still roaming the earth? These little guys date back over 220 million years to the time of the dinosaurs – woah! So don’t waste your time watching the new Jurassic world movie (wasn’t that good anyway), enjoy some turtle videos instead.

Although there’s a never-ending list of intriguing facts about turtles, hopefully one of these points has made you appreciate these underrated little critters a bit more.

Author

Holly Nelson (PhD Student) is working on how we can use genomics to revolutionise threatened species management. From genome assembly to downstream analyses using whole-genome data, Holly is using her work to answer genetic questions on the Bellinger River Snapping Turtle, Koala, and other threatened species. Her work, in partnership with the NSW Governments Saving Our Species program, aims to create more robust conservation strategies that can be developed and applied together with wildlife managers.

NSW Department of Planning and Environment: Keeping up with the Bellinger River snapping turtle

An article about people working to conserve the critically endangered Bellinger River snapping turtle to learn more about the species and what’s being done to try to protect it. Research to assist recovery of the Bellinger River snapping turtle is ongoing. University of Sydney PhD student Holly Nelson is using whole genome and genetic data to help inform and develop tools for the management of the species.

Find the full article here: https://www.environment.nsw.gov.au/news/keeping-up-with-the-bellinger-river-snapping-turtle